PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G168400.1
Common NameB456_011G168400, LOC105774934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 358aa    MW: 41310.4 Da    PI: 5.5002
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G168400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35421342103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++         weF +++F++g+++
  Gorai.011G168400.1  42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFGNEKFHRGQRH 123
                         9********************999******************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.011G168400.1 124 LLKNIRRRKTH 134
                         ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-5638131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3438131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-184265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNPYGRVKEE FPGASSSYPA GMPSMVTAQP MKGLHDAGPP PFLTKTYDII DDSSTNNIIS  60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFGNEKFHRG  120
QRHLLKNIRR RKTHQPQASQ SALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ  180
NTRTCLLTVE ERLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQQNDRSNEL EEAITKKRQR  240
RIDQRSMDVE TSEILGVKIE SEGYGVADFE VTELDKLVMN LQRLTGSQNN IELEHVEESK  300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YVDVLVEQLR YLGSSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-243713312122Heat shock factor protein 1
5d5v_D9e-243313317131Heat shock factor protein 1
5d5v_B9e-243313317131Heat shock factor protein 1
5d5u_B9e-243313317131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674170.0KR067417.1 Gossypium hirsutum HSF36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452954.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_012452955.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-131HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D2VN260.0A0A0D2VN26_G
STRINGPOPTR_0008s15740.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]